PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.J263200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 95aa MW: 11203.1 Da PI: 9.9733

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J263200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.9	4.5e-15	4	73	20	89
FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +k++ +g+it+ +fvC +eg+r ++k+ + ++ ++aetrt+C+ ++++ +++ ++ +vt+l+leHnH+l Pavir.J263200.1.p 4 NKRQSDGKITSCKFVCANEGHRLKDKRY-HLTKCPQAETRTDCQVHMNLIMDRkKEILKVTELVLEHNHQL 73 566789*****************999.999***********988877799************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-11	4	73	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MYTNKRQSDG KITSCKFVCA NEGHRLKDKR YHLTKCPQAE TRTDCQVHMN LIMDRKKEIL 60 KVTELVLEHN HQLHLPEILH LMVSQRKIFR FTSI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J263200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314647.1	2e-44	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	K4A129	6e-48	K4A129_SETIT; Uncharacterized protein
STRING	Si032571m	1e-48	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-08	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.J263200.1.p