PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J250800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 285aa    MW: 30584.4 Da    PI: 9.4233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J250800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19104154256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  Pavir.J250800.1.p 104 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 154
                        59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.06E-29103161No hitNo description
SuperFamilySSF541712.22E-22104161IPR016177DNA-binding domain
SMARTSM003802.9E-34104167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-30104161IPR001471AP2/ERF domain
PROSITE profilePS5103223.169104161IPR001471AP2/ERF domain
PfamPF008471.9E-13105154IPR001471AP2/ERF domain
PRINTSPR003672.5E-12105116IPR001471AP2/ERF domain
PRINTSPR003672.5E-12143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDASLRTLTP ASFPGEVRSA VSSLLLSSPG TNALDTVFSH LPPPVTIPPL GSSVYYRQCE  60
LLRHVAASQP QAAACSSSSS SSAASFQAPP DDAAAAAAML RQKLYRGVRQ RQWGKWVAEI  120
RLPQNRVRVW LGTYDSPETA AHAYDRAAFK LRGEYARLNF PGVMDGQDCP EHLRQLRVAV  180
DAKIQAIRAR LARKRARARK QREEGKESAR SEGAKPATAT AARPVVSEGA ATTSETTTTT  240
TTSTTPYGSP DGVLSVSAAS ADGDCPLERL PSFDPELIWE MLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18101161263ATERF1
3gcc_A1e-18101161263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197ARKRARA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J250800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808129.11e-150ethylene-responsive transcription factor ERF061
TrEMBLA0A3L6RBR91e-149A0A3L6RBR9_PANMI; Uncharacterized protein
STRINGPavir.J01332.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-30ERF family protein