PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J174400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 227aa    MW: 23678.6 Da    PI: 7.5084
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J174400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18133166134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++C + +Tp+WR+gp g++tLCnaCG+++++ +
  Pavir.J174400.1.p 133 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 166
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.899127163IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-14127181IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-14129191No hitNo description
Gene3DG3DSA:3.30.50.103.4E-14131164IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440133158IPR000679Zinc finger, GATA-type
CDDcd002021.39E-13133179No hitNo description
PfamPF003204.2E-16133166IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAGLEAEEEN PAAAAAAAEL AGGADASLNA FFDHAGLELA AGGGGQGAEE EEELEWLSNM  60
DAFPSVETMA AEVEAAPSRP SAGLGCLEAL PHVVGPRTKG LRRRRRVTAP WSLPPVLPPA  120
PPPAGGGAPR RRCTHCASEE TPQWRQGPAG PSTLCNACGV RFKSGRLFPE YRPMNSPTFT  180
PLLHSNSHRR VLEMRRHVEE EAAAGSGRAG ARARCAKRAA ATPHGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J174400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0184181e-113BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987179.13e-90GATA transcription factor 7
TrEMBLA0A3L6THM02e-89A0A3L6THM0_PANMI; GATA transcription factor 7
STRINGPavir.J23680.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-33GATA transcription factor 11