PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J160900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 356aa    MW: 38521.1 Da    PI: 9.8366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J160900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012128145320
                        ETTTTEEESSHHHHHHHH CS
            zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                        C  Cg++F+ ++ L rH 
  Pavir.J160900.1.p 128 CRVCGRRFRARDALLRHF 145
                        *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.094126154IPR007087Zinc finger, C2H2
PROSITE patternPS000280128149IPR007087Zinc finger, C2H2
CDDcd061670.00163224278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MWPITIRAAA EVSTTPTPPR CDSLPMFPPL SHLRRRVLAA APELPAPLFF LFLSTAAAPA  60
ACKPTTAVAV LWDLAASRPP ITLPLYDAAV RLHLAATSFG RLRLSAAFVH PTHRLPAPAV  120
PAATTHLCRV CGRRFRARDA LLRHFDAIHA REHAKCLARI DSSRGDRRVR LAAALSLKLS  180
KYEKAARELT AGADAAATPA DELGRAGIRV ALTRTPAASL RERAQQVLDE GSVGCLMLVS  240
GKDDLASLLR VARERGVRSV VVGGESGLAR WADVWFRWPD VISGKARSAA PSVSGKWRDR  300
DVLKGLEWRY EEADDDEAVV FEDSDGDGVE ELARRAKGKP WWKLDSDDSD SNVGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J160900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823075.10.0uncharacterized protein LOC112898963
TrEMBLA0A3L6PUC90.0A0A3L6PUC9_PANMI; Uncharacterized protein
STRINGPavir.J22986.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.15e-32C2H2 family protein