PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J144600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 362aa    MW: 36926.7 Da    PI: 6.6038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J144600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05105125323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        Cp Cgk F+++     H+++H
  Pavir.J144600.1.p 105 CPFCGKEFRSQKAVCGHMKVH 125
                        *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66103126IPR007087Zinc finger, C2H2
SMARTSM003550.0014103125IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.74E-7104125No hitNo description
PfamPF138943.9E-4104125No hitNo description
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-7314341No hitNo description
PROSITE profilePS501579.182319346IPR007087Zinc finger, C2H2
PfamPF139121.7E-5319343IPR007087Zinc finger, C2H2
SMARTSM003550.1319341IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAGGSSEDRW RRPSSRCHAD PRDDEPEEGE VVPGYHSDVD TEEYYNRHSC SSSDSDETIS  60
DSNAACSVPA SYGEATTSPS SVAANSNGAG ASASSPVAAR AALACPFCGK EFRSQKAVCG  120
HMKVHAIGAH GQGIRKGKGI KRDVAVVASW GGTGKRGCSG LASRTAPSTN AESDQSMAIV  180
VAEPKIVLQP KPLAFAAANL LSVPMASATP TLSSSLPMAS AVTNVSGQSS SAQPMHNAAM  240
DAVVAGPANP PSEAVVHQHA APPTSSAAAE QAPSIHQHPT APPTPPAAPE QAQSIHQHPS  300
APPPPPQPAA AGRQNPNGYT CKECNEWFPT HQGLGGHVAA HRSREVAAAA EGMLEDGAVA  360
CR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J144600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SL601e-164A0A3L6SL60_PANMI; Uncharacterized protein
STRINGPavir.J12116.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136