PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J123600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 286aa    MW: 30363 Da    PI: 6.2711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J123600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.72.3e-52622862211
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl..fsevsP 89 
                        ++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL ar +r   ++ + +a+++  +s   ++++++a++l  f++++P
  Pavir.J123600.1.p  62 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVARASRtgACKAVTAAVAAAVESAALHVHRFTAVELasFVDLTP 153
                        79***************************************************943444555555444444444777777777789****** PP

               GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfe 177
                        +++f++ +aN aIleaveg   vH++ ++ ++++Q p+L++ LasR+egpp lR+T+ + + s        ++ e+g +L +fA++ +++++
  Pavir.J123600.1.p 154 WHRFGYTAANAAILEAVEGFPVVHVVELGTTHCMQIPTLIDMLASRSEGPPILRLTVADVAPSApppaLDMSYDELGAKLINFARSRNMSMD 245
                        *********************************************************98866667877778899****************** PP

               GRAS 178 fnvl.......vakrledleleeLrvkpgEalaVnlvlqlh 211
                        f+v+        ++ +++l++++L ++  Eal+Vn+++ lh
  Pavir.J123600.1.p 246 FRVVttspadaFTSLVDQLRVQQLVLDGTEALVVNCHMLLH 286
                        ****666655445556677888888888*********9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.11335286IPR005202Transcription factor GRAS
PfamPF035148.1E-5062286IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMQFTHTAPP PPPLHPNGHG GLGLGLFLDV GAPRAARPWP GSFPTPASKI SLGNLNSTSC  60
MEQLLVHCAN AIEANDATLT QQILWVLNNI APPDGDSNQR LTAAFLCALV ARASRTGACK  120
AVTAAVAAAV ESAALHVHRF TAVELASFVD LTPWHRFGYT AANAAILEAV EGFPVVHVVE  180
LGTTHCMQIP TLIDMLASRS EGPPILRLTV ADVAPSAPPP ALDMSYDELG AKLINFARSR  240
NMSMDFRVVT TSPADAFTSL VDQLRVQQLV LDGTEALVVN CHMLLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-304028666306Protein SHORT-ROOT
5b3h_B8e-314028612252Protein SHORT-ROOT
5b3h_E8e-314028612252Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J123600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803436.11e-172scarecrow-like protein 32
SwissprotQ9SN223e-86SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A3L6TA250.0A0A3L6TA25_PANMI; Transcription factor containing protein, GRAS family
STRINGPavir.J20144.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-78GRAS family protein