 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.J122500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
CO-like |
| Protein Properties |
Length: 238aa MW: 25825.5 Da PI: 8.3258 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.J122500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 16.9 | 1.3e-05 | 5 | 40 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg...H 37
C+ + + ++ fC C+ lC C + H H
Pavir.J122500.1.p 5 ACQSCATHDAIVFCLLCGARLCLPCDAALHAAaglH 40
69****999*****************9999556666 PP
|
| 2 | CCT | 50.6 | 7e-18 | 167 | 211 | 1 | 44 |
CCT 1 ReaallRYkeK.rktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Re+a+lRY eK +k+R+F K+i Y+sRKa+A++R+RvKGrF+k++
Pavir.J122500.1.p 167 RERAKLRYAEKkKKNRRFCKQIMYASRKARADTRKRVKGRFAKAS 211
99******9862579***************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MPLSACQSCA THDAIVFCLL CGARLCLPCD AALHAAAGLH PRARLCDKCN LAPAALRCDD 60
VTLCAGCAGH GPPASALVAQ YTGCPAPKDL VRIISTETPP QQDALEVWIA DKLLEDDAGQ 120
LMEAGWDVAE ETAKLEKMLS DLSSSSALVA PSQSCLIRTD DKKRQERERA KLRYAEKKKK 180
NRRFCKQIMY ASRKARADTR KRVKGRFAKA STTSQDPHSY NPVHDDPSNT DKGETRS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 161 | 179 | KKRQERERAKLRYAEKKKK |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G15250.1 | 1e-17 | B-box type zinc finger protein with CCT domain |
