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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J117600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 214aa MW: 22159.7 Da PI: 5.8283 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.2 | 3.5e-38 | 3 | 61 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +s Pavir.J117600.1.p 3 AEGDPCPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSS 61 67789**************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-27 | 3 | 57 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.248 | 6 | 60 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.6E-32 | 7 | 58 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 8 | 44 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
QPAEGDPCPR CASRDTKFCY YNNYNTSQPR HFCKGCRRYW TKGGTLRNVP VGGGTRKKPS 60 SSPPSSYAAA ANSDKPRKPS KKKRRAVAPP PEPAPAATAA AAAAAATDAP KTETIEATTA 120 TTTTTATPAT TDPASEITTE LVVPAAAEEE DSLAHLLQPD VALGLGISEF PAGKGLDVEP 180 DSFEWPAAFD LGACWGSAGF ADPDPAGLFL NLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 84 | KKKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4364 | 1e-113 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues examined. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J117600.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965859 | 8e-80 | EU965859.1 Zea mays clone 289437 dof zinc finger protein MNB1A mRNA, complete cds. | |||
GenBank | EU969388 | 8e-80 | EU969388.1 Zea mays clone 329608 dof zinc finger protein MNB1A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822538.1 | 2e-99 | dof zinc finger protein MNB1A-like | ||||
Swissprot | P38564 | 2e-70 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | A0A2T8IHF2 | 5e-98 | A0A2T8IHF2_9POAL; Uncharacterized protein | ||||
STRING | LPERR08G15690.1 | 7e-70 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 8e-29 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J117600.1.p |
Publications ? help Back to Top | |||
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