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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.9NG846700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 369aa MW: 40706.1 Da PI: 10.6069 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG846700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 354.2 | 2.7e-108 | 1 | 357 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.................rernlalsekkaavaerd.............. 57
mdddgs rn+g+ye a k nlglqlmss++ +rd+k+ +++++ +++++++++r
Pavir.9NG846700.1.p 1 MDDDGSLGiRNWGFYETA---KGNLGLQLMSSVPpDRDTKPllpnggnflqhhghhnaQHQHQHQHHPQHSHHPRGggssgapggmptep 87
9*****999********9...************99**************998666555333333455555555555************** PP
GAGA_bind 58 ....maflqrdkalae.......rnkalverdnkllalllvensla........salpvgvqvlsgtksidslqqlse..........pq 118
m+f++++++l+ ++++ ++r++k+l+ l+v +++p+g++++ +++ +++lq+++ pq
Pavir.9NG846700.1.p 88 pavnMDFVRNETWLHPsqhhhqhQHQHQHPRQQKVLHHLPVGPVGHvghpghvgHHHPSGYGMMADAHGVHTLQMMQPqaqpqpqpqpPQ 177
**************9843433333445566677777766665544478899999**********99999999998433356665433222 PP
GAGA_bind 119 ledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestl 208
+++ + ++ee + ++pie+ ++++k+++ +kkrq++++pk++k kk+kk ++++++ ++++ +r + ++k++++v+ng++lD s++
Pavir.9NG846700.1.p 178 QPQDP-PPTKEESMPQPPIED-HPVIKNEPPVKKRQQGRQPKSPKPKKPKK-VAAPQENGAPNKPAPRPRGPRKTVGMVINGIDLDLSRI 264
11222.234666677888877.677788888888*****************.66777888877777************************ PP
GAGA_bind 209 PvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfv 298
P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DLk++WAkHGtnkfv
Pavir.9NG846700.1.p 265 PTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLKTFWAKHGTNKFV 354
****************************************************************************************** PP
GAGA_bind 299 tir 301
ir
Pavir.9NG846700.1.p 355 VIR 357
*98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MDDDGSLGIR NWGFYETAKG NLGLQLMSSV PPDRDTKPLL PNGGNFLQHH GHHNAQHQHQ 60
HQHHPQHSHH PRGGGSSGAP GGMPTEPPAV NMDFVRNETW LHPSQHHHQH QHQHQHPRQQ 120
KVLHHLPVGP VGHVGHPGHV GHHHPSGYGM MADAHGVHTL QMMQPQAQPQ PQPQPPQQPQ 180
DPPPTKEESM PQPPIEDHPV IKNEPPVKKR QQGRQPKSPK PKKPKKVAAP QENGAPNKPA 240
PRPRGPRKTV GMVINGIDLD LSRIPTPVCS CTGAPQQCYR WGAGGWQSAC CTTSISTYPL 300
PMSTKRRGAR IAGRKMSQGA FKKVLEKLAG EGYNLSNPID LKTFWAKHGT NKFVVIRDRV 360
PNPEVRRV*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
