PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG846000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 26253.7 Da PI: 8.6706 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 22 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEd l + v+ +G+ +W++I++ ++ gR +k+c++rw ++l Pavir.9NG846000.1.p 22 KSAWTKEEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWCQHL 68 579*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 77 | 119 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd++++ ++++++++ W+tIa ++ gR+++ +k+rw+++ Pavir.9NG846000.1.p 77 PFTPEEDDKIAGLHRLYPNK-WATIAGFLP-GRSDNAIKNRWNSV 119 79******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.196 | 17 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 20 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.8E-30 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-16 | 21 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 22 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.00E-15 | 24 | 68 | No hit | No description |
SMART | SM00717 | 4.9E-11 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.819 | 76 | 124 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.1E-13 | 77 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.94E-11 | 77 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 77 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAMQDEEAEA GAGGVRPVAM KKSAWTKEED AALREQVRAH GPQNWAAISA ALPGRNPKSC 60 RLRWCQHLTP GVDAVRPFTP EEDDKIAGLH RLYPNKWATI AGFLPGRSDN AIKNRWNSVL 120 GRQPQPQHQQ WALAAPLRRV SDRTLPLFPQ ASGDVRAIAR STWVLRHPPP GDAGADSSGA 180 CLKLFPLAPG DLVGANDTSE GAEMDVDRSD DDPTATGLRL WPCTRATSMA AFKAMVQTVR 240 AP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 1e-26 | 22 | 123 | 2 | 102 | MYB3 |
3zqc_D | 1e-26 | 22 | 123 | 2 | 102 | MYB3 |
3zqc_G | 1e-26 | 22 | 123 | 2 | 102 | MYB3 |
3zqc_J | 1e-26 | 22 | 123 | 2 | 102 | MYB3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG846000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798530.1 | 1e-138 | myb-related protein 308-like | ||||
TrEMBL | A0A3L6SC90 | 1e-143 | A0A3L6SC90_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J02742.1.p | 1e-171 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-36 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG846000.1.p |