PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG831400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 385aa MW: 41452.1 Da PI: 9.0877 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.7e-16 | 49 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ k+++lg ++ ++ Aa+a++ a++k++g Pavir.9NG831400.1.p 49 SIYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEDAAARAYDLAALKYWG 108 57*******************888866656446**********99*************98 PP | |||||||
2 | AP2 | 48.8 | 1.8e-15 | 151 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I + g +k+ +lg++ t e Aa a++ a+ +++g Pavir.9NG831400.1.p 151 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEAAAMAYDMAAIEYRG 202 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.4E-16 | 49 | 118 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-12 | 49 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.823 | 50 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-15 | 50 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-25 | 50 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 51 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-17 | 151 | 212 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-11 | 151 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.27E-13 | 151 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-17 | 152 | 211 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-25 | 152 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 152 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 192 | 212 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MAKPRKNSAA AAAANSNSAA AAGGDAGVRV KPKRTRKSVP RESPSQRSSI YRGVTRHRWT 60 GRFEAHLWDK NSWNESQNKK GKQVYLGAYD DEDAAARAYD LAALKYWGPD TILNLPASAY 120 EEELKEMEGQ SREEYIGSLR RKSSGFSRGV SKYRGVARHH HNGKWEARIG RVFGNKYLYL 180 GTYATQEAAA MAYDMAAIEY RGLNAVTNFD LSRYIKWLRP GADGGVAAAA AAAQNPHPML 240 AGLAQQQQLP PADAVVDAAA AAFQHDRRRA EFPLPPRTSL GHTPTTSALS LLLQSPKFKE 300 MIERTSAAES GTTTSSSSSP PPPSAQAQHQ APGDGGAASP QCGFPEDIQT FFGCEDVAGA 360 DVDALFFGDL AAYASPAFHF ELDL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14504 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG831400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039632 | 0.0 | BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds. | |||
GenBank | BT055111 | 0.0 | BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds. | |||
GenBank | KJ727588 | 0.0 | KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799409.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-109 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2T7ESG5 | 0.0 | A0A2T7ESG5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02213.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 8e-88 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG831400.1.p |
Publications ? help Back to Top | |||
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