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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.9NG827800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
HD-ZIP |
Protein Properties |
Length: 300aa MW: 32369.8 Da PI: 4.6988 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG827800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.1 | 7.4e-19 | 92 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r+++++t+eq++eLe Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k
Pavir.9NG827800.1.p 92 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 147
77889**************98**********************************9 PP
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2 | HD-ZIP_I/II | 117.3 | 8.6e-38 | 93 | 184 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr++
Pavir.9NG827800.1.p 93 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFNRLRAAHDELLAGRDALLADNDRLRSQ 182
69****************9999******************************************************************99 PP
HD-ZIP_I/II 91 lk 92
+
Pavir.9NG827800.1.p 183 VI 184
86 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MDSGRNMISS VAPFRAAGEG GGQVFLFGGG GGGGFLRSAP VVGAAGAADG WRRRKRPFQL 60 TAAHEELQLQ LELGDDELAG FDYELHGGPQ ERTKRRLTAE QVRELELSFE EEKRKLEPER 120 KSELARRLGI APRQVAVWFQ NRRARWKAKQ LEQDFNRLRA AHDELLAGRD ALLADNDRLR 180 SQVITLTDKL QAKESSVPAT ALKAATYASF EQDQLCTETA TTAGAAPAAG YTGGAGDSPE 240 SYLAGARSPP SSSEDDCGGG DGDDGAFFLP NPDMLLAAAA EEDGAQLSNW AWLWNEQQY*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 141 | 149 | RRARWKAKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK356850 | 1e-103 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |