 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9NG815600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 315aa MW: 34248.5 Da PI: 4.6275 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG815600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.3 | 7.2e-20 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q+++Le++Fe +++++ +++ ++A+ lgL+ rqV vWFqNrRa++k
Pavir.9NG815600.1.p 66 KKRRLAADQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWK 119
4557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 126.1 | 1.6e-40 | 65 | 157 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekkrrl+++qv++LE++Fe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktk lE+d++aL+++++al+++ ++L++++++L++e
Pavir.9NG815600.1.p 65 EKKRRLAADQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWKTKTLERDFAALRARHEALRADCDALRRDKDALAAE 154
69**************************************************************************************99 PP
HD-ZIP_I/II 91 lke 93
++e
Pavir.9NG815600.1.p 155 IRE 157
986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MKRQSKRPAS SHESTEEGEK LAVALDEALT ARNMEHEEAE LDDVNDDDDE LAGGRSARSP 60
CGLGEKKRRL AADQVRALER CFETDNKLDP DRKSRIARDL GLQPRQVAVW FQNRRARWKT 120
KTLERDFAAL RARHEALRAD CDALRRDKDA LAAEIRELRQ KLSKPEAAAK LEAAANDSAE 180
ERQATVGASA AAICKDGSSD SDSSVVFNDV EASPYSGAAF EQTAFAGFGP PFLDTSAATT 240
TGCSPLSMFE TKWQQAPAYP YDSYKNGGGY GFTEEWLASS DVIGSGDGAA SFFSEEHASS 300
LNFGWCASGT EAWE*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX469925 | 0.0 | JX469925.1 Zea mays subsp. mays clone UT3181 HB-type transcription factor mRNA, partial cds. |
