PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 341aa MW: 36658.8 Da PI: 6.0541

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG815200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.4e-14	113	164	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+++P++ ++ + + a+i+ A++Y+++L+ Pavir.9NG815200.1.p 113 QRMTHIAVERNRRRQMNEYLAVLRSHMPPS---YAHRGDQASIVGGAINYVRELE 164 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.21E-14	111	168	No hit	No description
SuperFamily	SSF47459	4.58E-17	112	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.624	112	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-13	112	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-11	113	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	118	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MALEAVVFSP AAAGHFGYSR GDSPYALPWC DMGGLGDLCA GGYWDQELDD AWAAAPAVWD 60 VDWAEAASRD DHSSDASSDR QQGKEAAPEP APAVRRKRRR TKVVKNKEEI ETQRMTHIAV 120 ERNRRRQMNE YLAVLRSHMP PSYAHRGDQA SIVGGAINYV RELEQLLQSL EVQKSIRNNR 180 RGGSTDAAGS SSSPFAAFFS FPQYSTSPAP GSSSSTSLGG SSNTSNNAAS SDVSSGGSAE 240 SGRPAAVADI EVTMVEGHAS LKVLARRRPK QLLKLVAGLH QLRIPPLHLN MTTVDAMVLY 300 TFSLKVEDDS KMGSVEDIAT AVHEILGSIQ QQQEEETAAM *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	RKRRR
2	95	100	RKRRRT
3	113	124	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG815200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961397	1e-121	EU961397.1 Zea mays clone 235094 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796362.1	0.0	transcription factor bHLH94-like
Swissprot	Q9C7T4	1e-73	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A2S3ITH6	0.0	A0A2S3ITH6_9POAL; Uncharacterized protein
TrEMBL	A0A3L6TQL1	0.0	A0A3L6TQL1_PANMI; Transcription factor bHLH94-like
STRING	Pavir.Ia04907.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG815200.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]