PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG802400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 666aa    MW: 73003.8 Da    PI: 6.264
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG802400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-28219272155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Pavir.9NG802400.1.p 219 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 272
                          79*******************.********************************8 PP
2Response_reg72.71.5e-24301381109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ +++l+ +l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + + +
  Pavir.9NG802400.1.p  30 VLAVDDDPVCLKVLEILLRRCRY-HVTTTNQAIMALKLLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVMK 117
                          799********************.***************99999********************87754.558***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+ +eel++
  Pavir.9NG802400.1.p 118 GITHGACDYLLKPVRIEELRN 138
                          *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.7E-1996665IPR017053Response regulator B-type, plant
SuperFamilySSF521721.42E-3427155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.6E-4027165No hitNo description
SMARTSM004485.3E-2928140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.69829144IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.2E-2230139IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.06E-2531143No hitNo description
PROSITE profilePS5129411.351216275IPR017930Myb domain
SuperFamilySSF466891.38E-19217276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-30217277IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25219272IPR006447Myb domain, plants
PfamPF002491.2E-6221271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MLLGAAGMEE ERKLVMMGRE RDQFPAGMRV LAVDDDPVCL KVLEILLRRC RYHVTTTNQA  60
IMALKLLREN RDMFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSVNG ETKSVMKGIT  120
HGACDYLLKP VRIEELRNIW QHVVRRKFSK RERINLDIYK DLNKQPSADS CHVHNQIVGG  180
ASDQSGRVSK KRKEMHSDEE DDGDDNDFQE GDEPSAAKKP RVVWSVELHR KFVAAVNQLG  240
IDKAVPKRIL ELMNVEKLTR ENVASHLQKY RLYLKRLSAV ASQQASIVAA FGGRDPSFLH  300
MGAFEGIQGY QPFVPSAALS SFNPHGLLTG TSAATFGVQE LAPTMTVQTA TNNAIIGHCN  360
SDGNKFQYVG LQENQPANLP QGSTTSLGLP QLQQKWIHQE NNDLSTVFSG SALANSLSGA  420
LQRVTSSPLP PQELLECTQA KLSIQPSMPM PSMNSELVER TVGVSSNLQD SSVSQQGALP  480
INDAFSTDKL QLHDPFDGTS GTKFSVTMPV CPIGSLTATK NKSGASSCGT VLLPPDTGRH  540
SNYLQFGGAG NSRHEMDGMK QDHLHNQEMS IGSFSHDFGA CMSEQTNANT SSLMPQMKIN  600
SMTSEDKLKQ QNIYDLGIPK LHGGFSSSSC NFDGLLSSMI KAEKDDLSFT DNDLGWDFFP  660
LGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24215278164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.265320.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG802400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810502.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A2S3HLT10.0A0A2S3HLT1_9POAL; Two-component response regulator
STRINGPavir.J08270.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-106response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]