|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.9NG794900.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bZIP |
Protein Properties |
Length: 409aa MW: 42332.9 Da PI: 4.8685 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG794900.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 41.9 | 2.1e-13 | 217 | 268 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
+ +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l +++
Pavir.9NG794900.1.p 217 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 268
679**************************************98887777665 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MERVFSVEEI PNPYWAPPQP QVAATGAVAA PGGGGGGGAG GAGDAAGAMN RCSSEWYFQK 60 FLEEAVLDSP GPVAGVGRGG GGGGVEAAES KPLGVAAAAS SAVVDPVEYN AMLKQKLEKD 120 LAAVAMWRVS GATPPERSAA GSSLPNVDVS HAVAFKPIGV ENKLAVAPVG GSGPQVVQNS 180 DILFKQTTSS SSREQSDDDD MEGEAETTGN ANPVQQRLQR RKQSNRESAR RSRSRKAAHL 240 NELEAQVAQL RVENSSLLRR LADVNQKFNE AAVDNRVLKA DVGTLRAKVK MAEDSVKRVT 300 GMNALFPAGS DMSSLSLPFN GSPSDSTSDA AVPIQDDPNS YFASPSEIGG NNGYMPEMAS 360 SAQEDDDFVN AALAAGKMDR TASLQRVASL EHLQKRMCGG PASSGSTS*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}. |
Publications
? help Back to Top |
- Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] - Yang D,Wu L,Hwang YS,Chen L,Huang N
Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] - Cheng S,Wang Z,Hong M
Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]
|