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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.9NG793400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 436aa MW: 49267.7 Da PI: 5.7788 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG793400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 60 | 5e-19 | 134 | 180 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
Pavir.9NG793400.1.p 134 KGQWTPEEDRKLVKLVEQFGLRKWSFIAQMLP-GRVGKQCRERWHNHL 180
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 188 | 228 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
W++eEd l++a+k+ G++ W+ Ia++++ gRt++++k++w+
Pavir.9NG793400.1.p 188 IWSEEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 228
6*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MDFSCFQPNA GICNYLPFDC MQQQNGYYDF HPADHPFEAI GDYISAGSMV PPATFNDLGH 60 QYFDEREIKK PIFNHASSIS HRFGSQLPLL TPKTEVSNLI ETGLGSYKAY EMSDRFVPRK 120 KTSSNSLKKP NVVKGQWTPE EDRKLVKLVE QFGLRKWSFI AQMLPGRVGK QCRERWHNHL 180 RPNIKKDIWS EEEDMVLIQA HKEVGNKWAE IAKRLPGRTE NSIKNHWNAT KRRQFARRRS 240 RTSSKRPKSG TLLQNYIKGL GIGPSKNVAP LAQPTLPPSS PATTPGANPA KIDEMLGEHR 300 PSDILDLQGM LGVHEYNRRE TDQSCEELLA PICSDDFSVA DMCEGLFDTK EDASCFQVFA 360 VDEDVDMSYI FNHLDQAIKV DPEIDMEMMW DDDALGCAEP AGAGSAQMET VHVKEEMDLM 420 EMVAATQKYA ETEKN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 231 | 246 | RRQFARRRSRTSSKRP |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC243252 | 0.0 | AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence. |