PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG788800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 709aa MW: 75015.3 Da PI: 6.5994

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG788800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.3	5.6e-30	67	151	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plW++vs++m++ g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ + +++f++lea Pavir.9NG788800.1.p 67 RWPRQETLALLKIRSEMDAAFREAALKGPLWDQVSRRMEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 151 8******************************************************************97..66667****985 PP
2	trihelix	105.4	3.9e-33	425	510	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+e+e r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr e+s+tcpy++qlea Pavir.9NG788800.1.p 425 RWPKAEVHALIQLRTELEARYQDSGPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-LEDSKTCPYYHQLEA 510 8*******************************************************************8.67888******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0034	64	126	IPR001005	SANT/Myb domain
Pfam	PF13837	7.8E-21	66	152	No hit	No description
CDD	cd12203	1.48E-27	66	131	No hit	No description
PROSITE profile	PS50090	6.69	66	124	IPR017877	Myb-like domain
SMART	SM00717	0.005	422	484	IPR001005	SANT/Myb domain
CDD	cd12203	8.98E-32	424	489	No hit	No description
PROSITE profile	PS50090	7.271	424	482	IPR017877	Myb-like domain
Pfam	PF13837	1.6E-22	425	511	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MQQPGMPPFS GTPPVGVGQN AATPTSTRPP EGQQPVGGTA SAAGGADHEA AAGMSAGGDE 60 GGPSGNRWPR QETLALLKIR SEMDAAFREA ALKGPLWDQV SRRMEAMGYK RSAKKCREKF 120 ENVDKYYKRT KDGRAGRGDG KAYRFFSELE ALHGASSSPA PTPVAMAPPA MQHADPPPRV 180 AAVPQPAPLM MSGATAPAAA AAGDAACMFT PGDVSFSSGS DGEDTEDTGD GGKRKRDGGD 240 VGSSKMMRFF EGLMRQVMER QEEMQQRFIE AIEKREKDRM IREEAWRRQE VARLAREQDA 300 LAQERAMAAC RDAAVVSFIQ RVTGQTIPMP SVSVAPPAFI GALAHPPLQP TPVASAAPPP 360 APHQQPPSVQ LSPKTPTMLK PAQPQSQHQT PPPAQPQSKE IIVRAPPAES QDTAGSGGGA 420 PSPSRWPKAE VHALIQLRTE LEARYQDSGP KGPLWEDISA GMRRLGYNRS SKRCKEKWEN 480 INKYFKKVKE SNKKRLEDSK TCPYYHQLEA LYRSKALASS SGAGGVAAAA PRPPQAAGVT 540 VLAAVPLSQT APHGGKQECT NGCAGRGGSD NGGSSGGMQT QATNGRFSVE GAGGNGVASN 600 KMQEEGITIT KETAATEPRP QPVSTNDSYV NDTMDSDSSM DDDDEEEDEF DDDDDERNVD 660 GGGGGGNSKM QYEIQFQRQQ QGQSASGGGG SSGPRGPAAA SFLTMVHH*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MQQPGMPPFS GTPPVGVGQN AATPTSTRPP EGQQPVGGTA SAAGGADHEA AAGMSAGGDE  60
GGPSGNRWPR QETLALLKIR SEMDAAFREA ALKGPLWDQV SRRMEAMGYK RSAKKCREKF  120
ENVDKYYKRT KDGRAGRGDG KAYRFFSELE ALHGASSSPA PTPVAMAPPA MQHADPPPRV  180
AAVPQPAPLM MSGATAPAAA AAGDAACMFT PGDVSFSSGS DGEDTEDTGD GGKRKRDGGD  240
VGSSKMMRFF EGLMRQVMER QEEMQQRFIE AIEKREKDRM IREEAWRRQE VARLAREQDA  300
LAQERAMAAC RDAAVVSFIQ RVTGQTIPMP SVSVAPPAFI GALAHPPLQP TPVASAAPPP  360
APHQQPPSVQ LSPKTPTMLK PAQPQSQHQT PPPAQPQSKE IIVRAPPAES QDTAGSGGGA  420
PSPSRWPKAE VHALIQLRTE LEARYQDSGP KGPLWEDISA GMRRLGYNRS SKRCKEKWEN  480
INKYFKKVKE SNKKRLEDSK TCPYYHQLEA LYRSKALASS SGAGGVAAAA PRPPQAAGVT  540
VLAAVPLSQT APHGGKQECT NGCAGRGGSD NGGSSGGMQT QATNGRFSVE GAGGNGVASN  600
KMQEEGITIT KETAATEPRP QPVSTNDSYV NDTMDSDSSM DDDDEEEDEF DDDDDERNVD  660
GGGGGGNSKM QYEIQFQRQQ QGQSASGGGG SSGPRGPAAA SFLTMVHH*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG788800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU951659	1e-130	EU951659.1 Zea mays clone 988816 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791925.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A2T7CIN4	0.0	A0A2T7CIN4_9POAL; Uncharacterized protein
STRING	Pavir.Ia04768.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-46	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG788800.1.p