PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG754300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27523.9 Da PI: 7.6397 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v+q+G g+W+++a+ g++R++k+c++rw +yl Pavir.9NG754300.1.p 15 KGPWTALEDRLLTEYVQQYGEGSWNSVAKLTGLRRSGKSCRLRWVNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 7e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ +++++++lG++ W++Iar+++ gRt++++k++w+++ Pavir.9NG754300.1.p 68 RGKITPDEETVILQLHAMLGNR-WSAIARCLP-GRTDNEIKNYWRTH 112 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.783 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.31E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.403 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.79E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDAISSLMLQ EGWRKGPWTA LEDRLLTEYV QQYGEGSWNS VAKLTGLRRS GKSCRLRWVN 60 YLRPDLKRGK ITPDEETVIL QLHAMLGNRW SAIARCLPGR TDNEIKNYWR THFKKARPSR 120 RARAQLLHQY QLQQQEQRRQ YLQSLHLLHQ HQHQQQQLQL LQQQSQQLMM SQQQSPPEPD 180 HQAAVMAMVS NDDQQGSPAS TAEHCTLPVP DDDDALLWDS LWKLVDGDGC GDGSSGGEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-28 | 15 | 115 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG754300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960450 | 0.0 | EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985745.1 | 1e-113 | transcription factor MYB2 | ||||
TrEMBL | K4AEH4 | 1e-111 | K4AEH4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia04415.1.p | 1e-176 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13228 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-61 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG754300.1.p |