PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG747700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 646aa    MW: 69142.2 Da    PI: 8.849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG747700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05534559123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C+  +C ++F++k +L +H ++ +
  Pavir.9NG747700.1.p 534 FECNidYCQMTFKTKVELSVHKKNmC 559
                          89*******************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035518534556IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219557586IPR007087Zinc finger, C2H2
SMARTSM003553.4557581IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280559581IPR007087Zinc finger, C2H2
SuperFamilySSF576673.02E-14568623No hitNo description
Gene3DG3DSA:3.30.160.601.0E-10574607IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676587616IPR007087Zinc finger, C2H2
SMARTSM003550.0017587611IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280589611IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-7608639IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035537617639IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MRIRRYAARL LNSTSPTAAA APSSPPPPPA ASWLHTAADD SCAFCELSRP APQEGPDAIK  60
HKGHIASRVP ESEVEGDERV RQAQQPPVPE VKKCKNDHGR NASKISVGLQ APRAASGVSE  120
AAVKPEVAGG ATLVNEADAE PAVKPATFIV NDAAIGQEVN CKFSLVSDAA KPEVTAGDSL  180
LNGSTTGLEI LEGAPLANEV AHDPEVTEKV SPESKAATVP EVTSTAAEVT GVPSRVNKSG  240
IILKVIRRNS LGKAVTDPGV ATNMLRTGSV EVTGVPSRMN KSGIRLEVIR RNSLGKAVTD  300
PGVANTMLRT GSLSTEDADR PKVTGAASVM QETTSVGVDY VASKAAAELE DSSRVSSNVD  360
DTATLDRPQL PSWNPNIGNM QLGNAGESVA STVQPSGCDA AKVLSSVNST SNGAVGAKGS  420
TVEGGLPNDG FVKPSVSCAY DIVARSIGTS GRSDVICYAR RRGKRKLELL EVKTENIELE  480
DDVICKEETL GRTGRCESVL STAGSVDVKL ADIKKELMDN SAANKVKKMK RNRFECNIDY  540
CQMTFKTKVE LSVHKKNMCT VKSCSRHFRS HRYLRRHQSV HNDDMPYKCP WDGCGMAFKW  600
SWDRAEHFKV HAGVKPYKCT TPGCNRIYKF VSDFTRHRRR CKPQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A8e-4253464023129Lysine-specific demethylase REF6
6a58_A8e-4253464023129Lysine-specific demethylase REF6
6a59_A8e-4253464023129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459465RRRGKRK
2459466RRRGKRKL
3526532KKMKRNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.220380.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG747700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792345.10.0uncharacterized protein LOC112873563
TrEMBLA0A3L6SAH40.0A0A3L6SAH4_PANMI; Zinc finger protein GLI1-like isoform X2
STRINGPavir.Ia04226.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-40relative of early flowering 6