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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.9NG743700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 294aa MW: 30994.9 Da PI: 6.1097 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG743700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.5 | 7.9e-19 | 101 | 149 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++GVr+++ +g+++AeIrdp + rkr +lg+f+taeeAa+ ++ a+++l+g
Pavir.9NG743700.1.p 101 FRGVRFRP-WGKFAAEIRDPAQ---RKRLWLGTFDTAEEAAAVYDDAALRLKG 149
8*******.**********943...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MSSADSLASG RSRRAGPPLP RPKRVRVYFV DADATDTDSS GDEDERGKRR VREVIHIDVE 60 AAGSAPAALA LVPPKKRPLA SSAAAALARR RAAAAGFRRS FRGVRFRPWG KFAAEIRDPA 120 QRKRLWLGTF DTAEEAAAVY DDAALRLKGC QAVVNFPSAP VSRCARMKPR PRREAAAAFD 180 PEGDDDDALA SPLAQPPPAP LEPEPQAVDA AAPFCPFASP TSLLRYGPDE VAAAPALPAF 240 DFLDGELGDI GAAAAPSKAA AAEFDWLPWW EGEDFVTATR LTPSAGAAAV SVV*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727877 | 1e-116 | KJ727877.1 Zea mays clone pUT5970 AP2-EREBP transcription factor (EREB52) mRNA, partial cds. |