![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG730400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 435aa MW: 46237.8 Da PI: 8.1629 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.4 | 8.9e-40 | 102 | 162 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Pavir.9NG730400.1.p 102 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 162 7899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 98 | 151 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 104 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.929 | 106 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 108 | 144 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 435 aa Download sequence Send to blast |
MAECRVGGGG GDCLIKLFGK TIPVPEVVAA AAAAVGEADK DIQQSGSSTS ELKGQENTLQ 60 DSTGSPLQHE VADTEDSSAA KNSSGDQQQG ETANQKEKLK KPDKILPCPR CNSMDTKFCY 120 YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ASAASHFLQR VRAALPIDPL 180 CTAAKTNGTV LSFGSDMSSL DLSEQMKHLK EKLVPITRIK SSDDRSVGSC TEGSAKGEDS 240 NQMNQKEKVT ADKSANVVQH PCMNGVTMWP FSCAPPPACY TSGIAIPFYP AAAAYWGCIV 300 PGAWNAPWPP HSQSESASSL STASPASTKS NCLTPGKRSR DSDEEGDTKG NGKVWVPKTI 360 RIDDADEVAR SSILSLIGIN GDKVGKDGRG CKLSRVFEQK EEAKTATHAV INSLPFLQGN 420 PAALSRSLTF QEGS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.3491 | 0.0 | callus| leaf| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG730400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC169375 | 0.0 | AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence. | |||
GenBank | HQ540086 | 0.0 | HQ540086.1 Sorghum bicolor clone SbDof23 Dof-type zinc finger protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796665.1 | 0.0 | cyclic dof factor 1-like | ||||
TrEMBL | A0A3L6S6E2 | 0.0 | A0A3L6S6E2_PANMI; Cyclic dof factor 1-like | ||||
STRING | Pavir.Ia04317.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-53 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG730400.1.p |