PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YA

Protein Properties

Length: 240aa MW: 26406.3 Da PI: 8.7007

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG726300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.6	8.4e-33	137	193	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh hA++R+Rg++GrF Pavir.9NG726300.1.p 137 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTSGRF 193 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.1E-37	135	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.687	136	196	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.5E-28	138	193	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-23	139	161	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	141	161	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-23	170	193	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MLPPHLIENG TIMIQFGHQM PDYDSPATQS TSESHQEVSG MSEGSLNDHN DQSGNHDGYS 60 KSDENKMMSA LSLGNPETAY AHPKPDRSQS FAISYPYADS YYGGAVAAYG QHAIMHPQLV 120 GMMPSSRVPL PIEPAAEEPI YVNAKQYHAI LRRRQLRAKL EAENKLVKSR KPYLHESRHL 180 HAMKRARGTS GRFLNTKQQS DSPGGSSDAQ RMPANGGLFT KHEHSHPPGD RHYHARGGA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-23	137	203	2	67	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20008	0.0	callus\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG726300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792631.1	1e-168	nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q9LVJ7	4e-43	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A2S3ITU7	1e-167	A0A2S3ITU7_9POAL; Uncharacterized protein
STRING	Pavir.Ia04345.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	1e-41	nuclear factor Y, subunit A6

Link Out ? help Back to Top
Phytozome	Pavir.9NG726300.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]