PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG665900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 243aa    MW: 24797.2 Da    PI: 5.6134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG665900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-183483255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Pavir.9NG665900.1.p 34 PYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 83
                         59****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-283492IPR001471AP2/ERF domain
SMARTSM003804.3E-333497IPR001471AP2/ERF domain
PROSITE profilePS5103221.6143491IPR001471AP2/ERF domain
PfamPF008471.3E-113583IPR001471AP2/ERF domain
CDDcd000182.28E-173590No hitNo description
PRINTSPR003675.5E-83546IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-193592IPR016177DNA-binding domain
PRINTSPR003675.5E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKNTSNGVA TAAAFSDDKA RPESGVGGKS AARPYKGVRM RSWGSWVSEI RAPNQKRRIW  60
LGSYATPEAA ARAYDAALLC LKGSGAVLNF PAAAAASSPS SSSSSPHHVD TRHSDPASSS  120
GPMSPRSIQR AAAAAAAAFD AGLGASVDDR CSSSAGATTP TAASLSVSTL CSADHVQEHA  180
TTSSSAAAST GSPAEGDELW TDLDTFASPK FMDLMAAGAA PFSSTWEDQE DDGEVMRLWS  240
FC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-132591772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG665900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276601e-94KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795709.11e-129ethylene-responsive transcription factor ERF014-like
TrEMBLA0A3L6TSU01e-132A0A3L6TSU0_PANMI; Uncharacterized protein
STRINGPavir.Ia03856.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.14e-22ERF family protein