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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.9NG659200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 541aa MW: 56199.8 Da PI: 9.1057 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG659200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.1 | 1.5e-05 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Pavir.9NG659200.1.p 57 FVCEICNKGFQRDQNLQLHRRGH 79
89*******************88 PP
|
| 2 | zf-C2H2 | 13.8 | 0.00017 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H +t+
Pavir.9NG659200.1.p 133 WKCDKCSKKYAVQSDWKAHVKTC 155
58*******************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MEVEATPTTA VSSSGGAAQL PPPGPPAKKK RALPGMPDPD AEVIALSPKT LLATNRFVCE 60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSG KEARKRVYVC PEPSCVHHDP SRALGDLTGI 120
KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HVKTCGSREY RCDCGTLFSR RDSFITHRAF 180
CDALAEESAK ARAEAPPADD DGGSSAAVGP PPAAPPTQAP VPAAPAPLRQ QPPPPPPAPH 240
RAEQRNEPET KAPEPTQLAP PLPSPAAAVP VLSHNSVTAA NVSARSSSSV AGTSQGLIGG 300
MFAPSSMAPA PQFPDLGGGV GRPERAMPGK PPSLCLATDA SSSIFSAPVA ADRQQFAPPP 360
PPSPSPHMSA TALLQKAAQM GATSSTSSFL RGLGLDASSP SPGASSSRQQ HHHDAMQVSL 420
PETSLQQWPP RLEQEPAPML SAGLGLSLPY DSTGAPVCLP ELMMGQSSLF GGKPATLDFL 480
GLGMSPTGAS AGRGLPTFML PIGGAVGMAG TGAGAAETFV AGRGPQATPW ERNPSTSPIL 540
*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. |
| Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT054502 | 0.0 | BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds. |
| GenBank | BT054618 | 0.0 | BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds. |
| GenBank | EU955578 | 0.0 | EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds. |
