PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG632300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 209aa    MW: 22089.4 Da    PI: 4.2735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG632300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05183205223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+k+F++ + L+ H +  H
  Pavir.9NG632300.1.p 183 VCKSCSKTFNSDMALQAHSKAkH 205
                          7*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.91182208IPR007087Zinc finger, C2H2
PROSITE patternPS000280184205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDFDSEEDED VGEEQNIPLI KENGKAQGKE EQKSKAGPAA SNSSAAVKDV DKKIKADDDS  60
DEDETDDDSD DDDLSPDEEG NDDDSSDEGD SSEEDEDSED DEEEETPTPK KPEVGKKRAA  120
ENALKTPVSD KKAKVATPSG QKTGGNKGTA HVPTPHPAKK VSKTPANNDK SKEKSPKSGG  180
SVVCKSCSKT FNSDMALQAH SKAKHGAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.1420.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG632300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810084.16e-77histone deacetylase HDT2-like
SwissprotQ9M4U54e-58HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLA0A2T7E9A01e-76A0A2T7E9A0_9POAL; Uncharacterized protein
STRINGPavir.J01431.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.18e-14histone deacetylase 2C