PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG607900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 218aa    MW: 23648.2 Da    PI: 8.7763
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG607900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.71.7e-213091259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                 WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                         +Dg++WrKYG K++++++fpr YYrCt++   +Cp++k+v+++ ++dp +  +tY +eH ++
  Pavir.9NG607900.1.p 30 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNEHSCN 91
                         8***************************99999*******8752679************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-231691IPR003657WRKY domain
SuperFamilySSF1182901.22E-222391IPR003657WRKY domain
PROSITE profilePS5081116.5362493IPR003657WRKY domain
SMARTSM007741.5E-312992IPR003657WRKY domain
PfamPF031064.5E-253090IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSPAPTSHQS QINSRKEKRM RKVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN  60
MNCPATKQVQ QKDHSDPPLY AVTYYNEHSC NSAFLPLSPS EFQLQTSSGK AVSICFDSSS  120
GPAAQEPPSA AAAAAPNASG GSPSSSAAPR RGTRPEISNP PVLRRSETYP WGAGAVEQKP  180
ASCSTECHDA FAGGAGAVPE EVVDAGRFGS IRFFHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-143090968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.58620.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG607900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586230.0KU058623.1 UNVERIFIED: Panicum miliaceum WRKY6-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792602.11e-143probable WRKY transcription factor 35
TrEMBLA0A2S3IR471e-142A0A2S3IR47_9POAL; Uncharacterized protein
STRINGPavir.Ib01500.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-18WRKY DNA-binding protein 46