PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WOX

Protein Properties

Length: 311aa MW: 31943.4 Da PI: 7.4092

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG604900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.6e-15	34	94	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Pavir.9NG604900.1.p 34 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 94 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.9	1.2e-34	33	96	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Pavir.9NG604900.1.p 33 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 96 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.52E-14	28	102	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.256	30	95	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	32	99	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-8	34	101	IPR009057	Homeodomain-like
Pfam	PF00046	4.9E-13	34	94	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDGSSNSPDR QSSGGSPEER GSGSGGRGTG EPVRSRWTPK PEQILILESI FNSGMVNPPK 60 DETVRIRKLL ERFGAVGDAN VFYWFQNRRS RSRRRQRQMQ AAAAAAAAAA SSAAQQSSPV 120 ASPTVGLPSG AVQYPVAMGG SASVCQYEQQ ASSSSSSGST GGSSLGLFAL GPGVPGTGAA 180 GYFQASCGAS SPLASGLMGD VDSGGSDDLF AISRQMGFAE SPVASSSVAP STAGHQQQYY 240 SSQSPAATIT VFVNGVPMEV PRGPIDLRAM FGQDVMLVHS TGALLPVNDY GILTQSLQMG 300 ESYFLVARPT *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG604900.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728413	0.0	KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796618.1	1e-165	WUSCHEL-related homeobox 6-like
Swissprot	Q10M29	1e-110	WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBL	A0A2S3IR14	1e-164	A0A2S3IR14_9POAL; Uncharacterized protein
STRING	Pavir.Ia03448.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	3e-32	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Pavir.9NG604900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]