PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG564600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 376aa MW: 40817.8 Da PI: 6.1949 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.7e-06 | 219 | 238 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Pavir.9NG564600.1.p 219 FICHVCNKTFNRYNNMQMHM 238 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.63E-5 | 215 | 242 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 219 | 238 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.201 | 219 | 246 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 221 | 241 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.45E-5 | 287 | 323 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.4E-4 | 290 | 323 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MGLRACAMEG GDAVGSPFFQ WLKPPRSSSS SASMAAAASG QQVVVLGEEG RAGGGAEEAS 60 SMTCLPLLSR LGEGKGADDH HEQCPVKEEI AMSGASIGDL AQSGVDLNIG LPMGGPCIED 120 AVMDDKDVDE EEEEEEGNEV EEEDDEDEGE EWKHVHGGCK VEGMDQQHEH GEVVASVVEG 180 SNNNGLGEFG VVGAESGLPI GCRYWIPTPA QILIGPVQFI CHVCNKTFNR YNNMQMHMWG 240 HGREYRKGPE SLKGTQTLAM LKLPCYCCAP GCKNNVGHPR ARPLKDFRTL QTHYKRKHGA 300 KPFSCRRCAK PFAVKGDWRT HEKNCGKRWF CACGSDFKHK RSLNDHARSF GAHHRPVDDP 360 AAAAVAGEVR RFHHI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5004 | 8e-57 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG564600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064334 | 0.0 | AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819090.1 | 0.0 | protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q8W030 | 1e-92 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A2S3HPS7 | 0.0 | A0A2S3HPS7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J31116.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 2e-92 | WIP domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG564600.1.p |
Publications ? help Back to Top | |||
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