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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.9NG557400.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GeBP |
Protein Properties |
Length: 372aa MW: 39957 Da PI: 6.5321 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9NG557400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 98.3 | 7e-31 | 58 | 163 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.......aksgkepsfs 81
lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K+++++k + g ++f+
Pavir.9NG557400.1.p 58 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCRKYrncverlRVAGAAFTFR 147
79*************************8867778**********************************9999867776666789999*** PP
DUF573 82 kehdqkifelskkiWg 97
++h+q ife+++ iW+
Pavir.9NG557400.1.p 148 SPHEQAIFEIARTIWR 163
***************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 372 aa
Download sequence Send
to blast |
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SVSAAPPPGA GAGERRPLFQ 60 RLWTDEDEIV ILRAFAEFTA QRGTSFASHQ YDTTPFYEDM RRRLHTGFTK NQLVEKIRRL 120 KRKYRNCRKY RNCVERLRVA GAAFTFRSPH EQAIFEIART IWRPDSDKHG RDSDDEAAAN 180 AHDGPLALDA NGESTKSPTS RPRRGGRRRR TGDFPADADA ETLALPPPPP MPVMAEDALP 240 SFPAAGMPAM DAGVGVGSIS IDPSAGLPAA MSAAAAAVTG GSTAENPILS ALFKEMVRAM 300 LSIGGGVTAA PLGLEPPPAI AGMPMEGEKW RQQRIRELEV YLRRIDLLQD QARAALEELR 360 SAPAARGGMN T*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 3e-22 | DNA-binding storekeeper protein-related transcriptional regulator |