PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.9NG555800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 148aa MW: 16031 Da PI: 6.9463

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG555800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	33	53	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C++ F ++ L H++ H Pavir.9NG555800.1.p 33 CTYCDRKFYTSQALGGHQNAH 53 ******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.57E-8	20	73	No hit	No description
PROSITE profile	PS50157	10.949	31	58	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MKTSEEGLDL ELSLLHRSPS PPEPEEPPGF FLCTYCDRKF YTSQALGGHQ NAHKYERALA 60 KRRREIAAAM RANQAIVRDA GGQVDADSRR TTGAARVVGV AGAEPEAADR ARPLVAQQSA 120 PVPWHSGELL LQGNMGRADE LDLTLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG555800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU960065	5e-46	EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792063.1	5e-65	uncharacterized protein LOC112873284
TrEMBL	A0A1E5UY22	3e-72	A0A1E5UY22_9POAL; Uncharacterized protein
STRING	Pavir.Ia03258.1.p	1e-104	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	7e-15	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Pavir.9NG555800.1.p