PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG555800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 148aa MW: 16031 Da PI: 6.9463 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 33 | 53 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C++ F ++ L H++ H Pavir.9NG555800.1.p 33 CTYCDRKFYTSQALGGHQNAH 53 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.57E-8 | 20 | 73 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 31 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 33 | 53 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MKTSEEGLDL ELSLLHRSPS PPEPEEPPGF FLCTYCDRKF YTSQALGGHQ NAHKYERALA 60 KRRREIAAAM RANQAIVRDA GGQVDADSRR TTGAARVVGV AGAEPEAADR ARPLVAQQSA 120 PVPWHSGELL LQGNMGRADE LDLTLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG555800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960065 | 5e-46 | EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792063.1 | 5e-65 | uncharacterized protein LOC112873284 | ||||
TrEMBL | A0A1E5UY22 | 3e-72 | A0A1E5UY22_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03258.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 7e-15 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG555800.1.p |