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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9NG555700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 146aa MW: 15365.3 Da PI: 7.6039 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG555700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16 | 3.4e-05 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C++ F ++ L H++ H
Pavir.9NG555700.1.p 33 FVCTYCDRKFYSSQALGGHQNAH 55
89******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 146 aa
Download sequence Send
to blast |
MERLMAEQEL DLELSLLHPC SAAAAQAEPP GFFVCTYCDR KFYSSQALGG HQNAHKYERT 60
LAKRRREIAA AMRAHGARVD AAGGRPGGAG DVAAGAAEAL MARLLDARQA GPVPGGQSSG 120
HLRSKSSSLE HGVERADELD LSLKL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005686 | 4e-53 | AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03. |
| GenBank | AP005747 | 4e-53 | AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17. |
| GenBank | AP014965 | 4e-53 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 4e-53 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
