PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG555600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 146aa MW: 15492.1 Da PI: 5.5494 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 35 | 55 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F ++ L H++ H Pavir.9NG555600.1.p 35 CTYCGRKFYSSQALGGHQNAH 55 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.43E-8 | 24 | 75 | No hit | No description |
PROSITE profile | PS50157 | 11.78 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
METEQQELDL ELRLFFHPSA SATPEEDESL GFFLCTYCGR KFYSSQALGG HQNAHKYERT 60 LAKRRREIAA SLRAHGGAAS GTAAAVQVVD VDADGESPGA AGADSDVDKA RPLGAHQAAP 120 GPGQQYGSLL RHVDRAGELD LSLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG555600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005686 | 9e-51 | AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03. | |||
GenBank | AP005747 | 9e-51 | AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17. | |||
GenBank | AP014965 | 9e-51 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 9e-51 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661315.1 | 6e-51 | uncharacterized protein LOC101764348 | ||||
TrEMBL | A0A2T7CCD9 | 6e-73 | A0A2T7CCD9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03271.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 2e-15 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG555600.1.p |