 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9NG554900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 309aa MW: 33270.5 Da PI: 8.0222 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG554900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+ lv +v+++G+g+W+++++ g+ R+ k+c++rw +yl
Pavir.9NG554900.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPASTGLARCSKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 47.3 | 4.9e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg ++ +Ed l++++ ++lG++ W++Ia++++ Rt++++k++w+++l
Pavir.9NG554900.1.p 67 RGGFSDQEDRLIAHLQALLGNR-WAAIASHLP-DRTDNDVKNYWNTHL 112
7889******************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PASTGLARCS KSCRLRWTNY 60
LRPGIRRGGF SDQEDRLIAH LQALLGNRWA AIASHLPDRT DNDVKNYWNT HLKKKLLLQH 120
HQHQQQCAPS TPSPPPNKGR WELRLQTDID LARRALRDAL ASPPAGTMIT GATAPAPPPL 180
PAEPAPAYAL TARDVSCMQD GWAPPTPGKK SGSPATPPQP VAAESASGST SELATKCSAA 240
SISSASNNKR AAPVAENQLF VREEEKAAAG EVRLSEIESW LLEDDGCGEQ KPAHDGTLLD 300
AALHRFGF*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 8e-27 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 1e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 8e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 8e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962848 | 1e-171 | EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds. |
