PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG532000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 404aa MW: 41126.1 Da PI: 9.9822 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 102.4 | 2.6e-32 | 100 | 158 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+ l+cprC s++tkfCyynnyslsqPr+fC+aCr yWt+GGalr++P +++r++++s Pavir.9NG532000.1.p 100 ESGLPCPRCRSADTKFCYYNNYSLSQPRHFCRACRHYWTHGGALRDLPFSSSARRRRRS 158 67899************************************************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-23 | 83 | 147 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-29 | 103 | 157 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.673 | 103 | 157 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MLDATRRRKQ TTKEDQFSAM LHHGRIIPTH GGGTGGRGGK EAHRNKQHHH QLPGAPPVAP 60 QPGMPAEASM SAGGGSSSCS WVKPGCMMEL ARLAKIPPPE SGLPCPRCRS ADTKFCYYNN 120 YSLSQPRHFC RACRHYWTHG GALRDLPFSS SARRRRRSKP ASTKHEPSSK VASCCASGTG 180 ARASPSTSSG VSAVPGGGGG RAVAAVATAV MHTPQPLAQL ASLAVGAERH RTVASSRLWL 240 PGHRSSQQQD PLGYRHQLGN ITALPLPPPS GYINAAIAAP PTTPAAGSLI GASDAGGTEA 300 GSFAGGQMQA AIISRVPGSA ALTTEPAASE MMMGTLTTAS SPGEFQVESG GLSHFLGSGS 360 WACSYGSCSA GNGGGSNSCA AAPGTSVWPD PSGPTSSSSG TML* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 9 | TRRRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG532000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792039.1 | 1e-120 | dof zinc finger protein 3-like | ||||
TrEMBL | A0A2T7CBF6 | 1e-141 | A0A2T7CBF6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03326.1.p | 1e-173 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22884 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 8e-29 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG532000.1.p |