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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.9NG475000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
Trihelix |
| Protein Properties |
Length: 137aa MW: 13442.6 Da PI: 4.4622 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG475000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 36.9 | 9.4e-12 | 101 | 136 | 1 | 36 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36
rW++qe+l+L+++r+em+ ++r++ lk+plWe+vs+
Pavir.9NG475000.1.p 101 RWPRQETLELLKIRSEMDAAFRDATLKGPLWEQVSR 136
8*********************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 137 aa
Download sequence Send
to blast |
MQQQHGGGGG GGGGGGGGGP AQQFGAQQVE MPPPFSPAGG AGQRISLAEA PSPISSRPPA 60
PAQQYDELGA SSAGAGSFDA EGLAAAAAGE EGASGGSAGN RWPRQETLEL LKIRSEMDAA 120
FRDATLKGPL WEQVSR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in siliques, and, to a lower extent, in growing root hairs, leaves, stems, and flowers. Present in abaxial epidermal cells, predominantly in guard cells, pavement cells, and meristemoids. {ECO:0000269|PubMed:21169508, ECO:0000269|PubMed:9501260}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT061205 | 1e-117 | BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds. |
