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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG470700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 24251.3 Da PI: 6.653 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 33 | 75 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr +++E+ l +++++++G+ W++Iar+++ gRt++++k++w + Pavir.9NG470700.2.p 33 GRLSPQEERLAIELHARWGNS-WSRIARRLP-GRTDNDIKNYWKT 75 7889***************99.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 12 | 26 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.55E-19 | 12 | 83 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 12 | 38 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.722 | 27 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-13 | 33 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-10 | 36 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-18 | 39 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDRAGGHATG LNRTGKSCRL RWVNYLHPSR KHGRLSPQEE RLAIELHARW GNSWSRIARR 60 LPGRTDNDIK NYWKTRMRMK AQERELSMSP SSSSFSLMYQ SSCLLDTAPV DGMSCGDTRD 120 VNVSSCITGS ALECTDGFPM DQIWREMETP LQAPVSMPQG IHQADEKTCS SSVPFSPPAT 180 TASMWDDQCP EVFWNMDPEE IRMLTPQFDC RDW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-15 | 13 | 81 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-15 | 13 | 81 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-15 | 13 | 81 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-15 | 13 | 81 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-15 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-15 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG470700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021316575.1 | 1e-120 | myb-related protein MYBAS1 isoform X2 | ||||
Swissprot | Q53NK6 | 3e-70 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A1B6PU49 | 1e-118 | A0A1B6PU49_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ia02093.1.p | 1e-159 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 3e-46 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG470700.2.p |
Publications ? help Back to Top | |||
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