 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9NG437100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
NAC |
| Protein Properties |
Length: 251aa MW: 27591.8 Da PI: 5.4987 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG437100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 134.7 | 6.3e-42 | 5 | 136 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85
lppGfrF Pt+eel+++yL++k++g + ++e+vi+ +d++ ++Pw+Lp+ ++++ + w++F++r++++a+g r+nr+t sgyWka
Pavir.9NG437100.1.p 5 LPPGFRFYPTEEELLCFYLRNKLDGVRqGDIERVIPVADVCALDPWQLPEahrgAFSGAAEPWFYFCPRQEREARGGRPNRTTPSGYWKA 94
79**********************9885677788**************95455555557789**************************** PP
NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
g+ v++++g+ +g+kkt+vfy+grap g kt+W ++ey+
Pavir.9NG437100.1.p 95 AGTPGLVYAADGRSIGTKKTMVFYRGRAPAGAKTKWKLNEYK 136
*****************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MADELPPGFR FYPTEEELLC FYLRNKLDGV RQGDIERVIP VADVCALDPW QLPEAHRGAF 60
SGAAEPWFYF CPRQEREARG GRPNRTTPSG YWKAAGTPGL VYAADGRSIG TKKTMVFYRG 120
RAPAGAKTKW KLNEYKALEV EDEDAAGVPA PSHAFQTRGE FTLCRLYTES GCPRQFDRRP 180
SAAAAAGGGS ENRIAAAALA NGEEMGRKRK RAAPSDGDGS TQQLLGQRGT DEGLNDDMAY 240
WSEILEYDWL *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-33 | 5 | 175 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-33 | 5 | 175 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-33 | 5 | 175 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-33 | 5 | 175 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-33 | 5 | 175 | 17 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 4e-33 | 5 | 175 | 17 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP093626 | 1e-137 | FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence. |
