PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 297aa MW: 32834 Da PI: 7.3242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG407500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.9	4.8e-15	94	145	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+ Pavir.9NG407500.1.p 94 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 145 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-14	92	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.16E-12	92	142	No hit	No description
PROSITE profile	PS50888	16.412	93	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-18	93	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-12	94	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-11	99	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MALLDAVVYP HPQGHFGYGL SWSSDATSFG EWDPFLLASL VQNTEWGEEV GSKKASPEHY 60 AAPSAVEPPS PVTMTKRKRR RPMVVKNEEE IESQRMTHIA VERNRRRQMN EYLAVLRSLM 120 PPSYAQRGDQ ASIVGGAINY VRELEQLLQS LELQRKEHNP NLSNPFAGFF RFPQYSATSA 180 SHCHGGAGNR TNKEERPDRS PQSPSVAADI EASMVEGHAS VKVQAPRRPR QLLRLADGLQ 240 QLGLTTLLLN VSTAGTTVMY SFSLKVEDEC RLSSVEEIAA AVHEILGTVQ ERGGRL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	80	KRKRRR
2	76	80	RKRRR
3	94	105	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG407500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058809	1e-66	AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797243.1	0.0	transcription factor bHLH94-like
Swissprot	Q9C7T4	1e-66	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A3L6SER8	0.0	A0A3L6SER8_PANMI; Transcription factor bHLH96-like
STRING	Pavir.Ia02758.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG407500.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]