PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG384300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 458aa    MW: 49756.7 Da    PI: 5.3824
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG384300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.35.2e-18141582127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya............tgkrkn 75 
                          p+G+rF Pt  el+   L  +++g+    +l++++++v+i++++P++L +++k+  e++ +yf s r+ +++            +++r+ 
  Pavir.9NG384300.1.p  14 PRGYRFVPTSLELI-SILSDQIRGRAlpPPLHTIFHDVRILDYHPEELYERFKHasEHRFLYFLSVREFQKPgagaavpedkdqKERRPV 102
                          89************.78*******9976677778**************865544114445588888887777777777776554455788 PP

                  NAM  76 ratksgyWkatgkdkevlsk...kgelvglkktLvfy.kgrapkgektdWvmheyr 127
                          r+++ g Wk +g  + +      +g + g   t+vfy + +  +g+k++W mhe+ 
  Pavir.9NG384300.1.p 103 RVARGGGWKPSGGGQVLRWPrknGGFVAGRMVTMVFYdRVDGGDGVKSNWGMHEFL 158
                          8899********9776665544455569999******556999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-238173IPR003441NAC domain
PROSITE profilePS5100522.92713179IPR003441NAC domain
PfamPF023651.5E-914157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAAADGSLTK HGFPRGYRFV PTSLELISIL SDQIRGRALP PPLHTIFHDV RILDYHPEEL  60
YERFKHASEH RFLYFLSVRE FQKPGAGAAV PEDKDQKERR PVRVARGGGW KPSGGGQVLR  120
WPRKNGGFVA GRMVTMVFYD RVDGGDGVKS NWGMHEFLIP VNPRLTSLTD NKYIRFYDLA  180
FSSSSQQMMP NAYDHFPGSP AAVSPCSPLQ PWGISTGINY HQPLAAGAST SHIMSPPPPQ  240
QQHPSYAQYY QYQQQQHAFS AAAEPQAHTT HGAEFPGNMY QQYQLAIPPP AVVVPTAAAN  300
PEAAHQPPAM ATRCAGQQDE AGPSGATRSP SPPPAAATEP GRVQVPDCVK MMEVAAPPTL  360
EGIAPPVAKD ESLDDADDYS ELGMPDWNSN FDLMPLDDSY LQFTMEELLG VFPAFDGEPP  420
AMEGDGNNSG GENYGQASDG GAKEKLLVVD RCILISS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG384300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791727.11e-121NAC domain-containing protein 72-like
TrEMBLA0A3L6TIB20.0A0A3L6TIB2_PANMI; Uncharacterized protein
STRINGPavir.Ia01976.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01520.17e-09NAC domain containing protein 67