 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9NG377600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 296aa MW: 32349.3 Da PI: 4.7579 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG377600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.2 | 6.7e-19 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k
Pavir.9NG377600.1.p 69 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 122
4557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 125.7 | 2e-40 | 68 | 160 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L++++++L++e
Pavir.9NG377600.1.p 68 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFAALRARHDALRAECDALRRDKDALAAE 157
69**************************************************************************************99 PP
HD-ZIP_I/II 91 lke 93
++e
Pavir.9NG377600.1.p 158 IRE 160
986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MKRPTSRGSS MVSQATTDQQ EDSCRYMERH GVDGDGTAAA DRDDMEAGAY DEEDDDEELA 60
GSRGGLGEKK RRLAADQVRA LERSFEVDNK LDPERKARIA RDLSLHPRQV AVWFQNRRAR 120
WKTKQIERDF AALRARHDAL RAECDALRRD KDALAAEIRE LREKVERQMD VKLESAEEML 180
PVAAGTAAAA AAVYKDGSTD SDSSAVFNEE ASPYSGTAFD HQHQHQLHPS FTGFTSFLAS 240
SSSLSSSLPT SLYHGVSHLD QEADGFLSAA AADGFFAEAE QGAAGLGSWY GGEGW*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 116 | 124 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT042027 | 0.0 | BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds. |
| GenBank | KJ727556 | 0.0 | KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds. |
