 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.9NG369700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 248aa MW: 27117.8 Da PI: 8.2951 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG369700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.3 | 1.3e-18 | 97 | 151 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k
Pavir.9NG369700.1.p 97 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 151
78889************************************************98 PP
|
| 2 | HD-ZIP_I/II | 124.5 | 5e-40 | 97 | 185 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++L+ +
Pavir.9NG369700.1.p 97 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLH-A 185
69*************************************************************************************8.3 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MEQEEVGLAL GLSLGSGPYQ LKEQPSPSSH SGTLLEPSSL SLGLPAKDSP AAPVRIAAVK 60
RELRMEDYDE ATDRALYSVA SSALVVAPDD DEGCNSRKKL RLTKEQSALL EDRFKEHSTL 120
NPKQKAALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE LLKRCCETLT EENRRLHREL 180
QQLHALNHPH TAAFFMPAAT LSICPSCERL TGVPAAAATT NGADRPKPSG PGRATHLFNP 240
FTNSAAC*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 95 | 101 | SRKKLRL |
| 2 | 145 | 153 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT054580 | 1e-123 | BT054580.1 Zea mays full-length cDNA clone ZM_BFc0164J19 mRNA, complete cds. |
| GenBank | EU962030 | 1e-123 | EU962030.1 Zea mays clone 239717 homeobox-leucine zipper protein HAT22 mRNA, complete cds. |
| GenBank | KJ727618 | 1e-123 | KJ727618.1 Zea mays clone pUT5529 HB transcription factor (HB121) mRNA, partial cds. |
