 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9NG367000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
WRKY |
| Protein Properties |
Length: 447aa MW: 47987.6 Da PI: 6.7419 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG367000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 97 | 1.2e-30 | 206 | 264 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
Pavir.9NG367000.1.p 206 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 264
699************************998****************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 447 aa
Download sequence Send
to blast |
MCDFFWMSPA DQGDLSDVVR ASLQQQQPHL RLPATPAPAA VCRCSHGSLG SRHLPEEEEL 60
LLLLQQGRVN LVDGDHEAHL QQQQRQLVRG NGGMGLVVGS NAALYPHPQH HPEAEGLVIP 120
QLMSGPPQPQ LCAPSSSFAE REDDAAHAPA VPEELGLDTA MATHPHASSI KRRKSQTKKV 180
VCIPAPVAPP PGVGGRPSTS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR 240
KQVERSRTDP SMLVITYTSD HNHPWPMQRN ALAGSIRPAA ASSSSTSSAK NHHHQHRSSV 300
AADAVPYPTP PHRRHASNVA VANNCNATPP AAGSITASVH HHQLLKQEVL DMDNLEPALD 360
AAADDDHLGG MIADVDGALN VLCASSFHYS KKQQQHATAG QPEELPEEED KLQLLLDRDP 420
FSFSFFDWVG ASFGVGEAAA NQGGYC*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC018727 | 6e-76 | AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence. |
| GenBank | AP014966 | 6e-76 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012618 | 6e-76 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
| GenBank | KC954610 | 6e-76 | KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds. |
