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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG356600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1027aa MW: 114084 Da PI: 5.4375 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.2 | 1.6e-53 | 21 | 138 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+ee Pavir.9NG356600.1.p 21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEE 110 45559************************************************************************************* PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n +fqrr+yw+Lee++ +ivlvhyle+k Pavir.9NG356600.1.p 111 NINFQRRTYWMLEEDFMHIVLVHYLETK 138 *************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.32 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.3E-71 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.7E-48 | 23 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.9E-6 | 447 | 534 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 6.8E-17 | 448 | 534 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 9.9E-7 | 448 | 526 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 9.79E-16 | 621 | 742 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.0E-16 | 631 | 743 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.47E-11 | 643 | 740 | No hit | No description |
PROSITE profile | PS50088 | 8.683 | 649 | 681 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.937 | 649 | 714 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 682 | 714 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.73E-8 | 842 | 894 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.086 | 843 | 865 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 844 | 873 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0032 | 845 | 864 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 866 | 888 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.56 | 867 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 869 | 888 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1027 aa Download sequence Send to blast |
MASAEARRLA VVPHLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW 120 MLEEDFMHIV LVHYLETKGG KSSRARVNNN MIQEAAVDSP LSQLPSQNIE GESSLSGQAS 180 EYEEAESDIY SGGAGYHSFT GMQQHENGTG PVIDSSVFSS YTPASSIGNY QGLHPMTQNT 240 SFYPGNQHSS PLVLNESSTG VAMNGYANQI DPTSWNPVIE LDNGPVQMPL QFPVPPEQGT 300 STEGLGIDYL TFDEVYSDGL SLKDIGDAGA GGESFWQFPG ATGDLSTPES SFPQPNDGSL 360 EAAIGYPFLK TQSSNLSDIL KDSFKKTDSF TRWMSKELLE VEDSQIQSSS GAYWSTEEAD 420 SIIEASSREP LDQFTVSPML SQDQLFSIVD FAPTWTYVGS KTKILVTGSF LNNSKVTERC 480 KWSCMFGEVE VPAKILADGT LLCYSPQHKP GRVPFYITCS NRLACSEVRE FEFRPTVTQY 540 MDTPSPHGAT NKVYFQVRLD KLLSLGPDEY QATVSNPSLE MIELSKKITS LMASNDEWSN 600 LLKLAVDNEP STDDQQDQFA ENLIKNKLHV WLLNKVGVGG KGPSVLDDEG QGVLHLAAAL 660 GYDWAIRPTL AAGVNINFRD VHGWTALHWA AFCGRERTVV ALIALGAAPG ALTDPSPDFP 720 ESTPADLASA NGQKGISGFL AESSLTSHLQ ALNLKEANMA EISGLPGIGD VTERDSLQPP 780 SGDSLGPVRN AAQAAARIYQ VFRVQSFQRK QAAQYEDDKG GLSDDRALSL LSVKPSKPGQ 840 LDPLHSAATR IQNKFRGWKG RKEFLLIRQR IVKIQAHVRG HQVRKHYRKI VWSVGIVEKV 900 ILRWRRRGAG LRGFRSTEAS TEGSSGGTSS NMIKDKPSGD DYDFLQEGRK QTEERLQKAL 960 ARVKSMAQYP EARDQYQRIL TVVSKMQESQ AMQEKMLEES AEMEDGYFMN ELQELWDDDT 1020 PLPGYF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7063 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG356600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793388.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X2 | ||||
TrEMBL | A0A3L6TUJ2 | 0.0 | A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2 | ||||
STRING | Pavir.Ia02749.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG356600.1.p |