PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG355600.4.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 543aa MW: 60141.7 Da PI: 5.5481

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG355600.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	431.1	8.5e-132	172	541	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++++++c +av+++d +++ l+++l +l+s +gdpmqRl ay++e++ arl++s+s lyk+l+++e + sse +++++l++e++P+ Pavir.9NG355600.4.p 172 LKQVIIACGKAVAENDVFATELLISELGQLVSVSGDPMQRLGAYMLEGIVARLSSSGSMLYKSLKCKEPT---SSELMSYMHLLYEICPF 258 57899**************************************************************9...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +kf+++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp ++iTg+++++s + l +g+rL+++A+++g+pfef Pavir.9NG355600.4.p 259 FKFGYMSANGAIAEAIKGENFVHIIDFQIAQGSQWITLIQALAARPGGPPYIKITGIDDSNSAyaRGGGLDIVGRRLHSVAQSCGLPFEF 348 *******************************************************988899999****************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n+ v + ++++l +L+++pgE +aVn+++qlh+++desvs+e++rd++++++ks++P+vv++veqe+++n+++F+ r +e+l+yy+a+f Pavir.9NG355600.4.p 349 NA-VPAASHEVQLAHLALRPGEIIAVNFAYQLHHVPDESVSMENHRDRIIRMIKSINPRVVTLVEQESNTNTAPFFPRYMETLNYYTAMF 437 .7999********************************************************************************* PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +s+++ lpr+++ r++ E+++++r+ivn++acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++++llr ++s yr+ee+ g l Pavir.9NG355600.4.p 438 ESIDVALPRDDQRRMSAEQHCVARDIVNLIACEGAERVERHELFGKWKARFAMAGFRPYPLSSVVNNTINTLLRSYNSC-YRLEERGGVL 526 *************************************************************************55.****** PP GRAS 359 vlgWkdrpLvsvSaW 373 +lgWk+r Lv+ SaW Pavir.9NG355600.4.p 527 YLGWKNRVLVVSSAW 541 ************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.57	146	523	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-129	172	541	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0005737	Cellular Component	cytoplasm
GO:0004871	Molecular Function	signal transducer activity

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MSARDSNRPY EISEDSQMPY YNNSATVEEN DRFHVMQNNL DHHHSSPDDG SQKINSSNTQ 60 IFEAQYCTLE SSSANGVYPA QSSTSSHSIS PLSGSPLSQH DSHSDHTYSS PPSASCLTEV 120 ADLQIKLKEL ENAILGPELD ITSDSPESFL QANVQLRPDN WRQLLGIDAG DLKQVIIACG 180 KAVAENDVFA TELLISELGQ LVSVSGDPMQ RLGAYMLEGI VARLSSSGSM LYKSLKCKEP 240 TSSELMSYMH LLYEICPFFK FGYMSANGAI AEAIKGENFV HIIDFQIAQG SQWITLIQAL 300 AARPGGPPYI KITGIDDSNS AYARGGGLDI VGRRLHSVAQ SCGLPFEFNA VPAASHEVQL 360 AHLALRPGEI IAVNFAYQLH HVPDESVSME NHRDRIIRMI KSINPRVVTL VEQESNTNTA 420 PFFPRYMETL NYYTAMFESI DVALPRDDQR RMSAEQHCVA RDIVNLIACE GAERVERHEL 480 FGKWKARFAM AGFRPYPLSS VVNNTINTLL RSYNSCYRLE ERGGVLYLGW KNRVLVVSSA 540 WC*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MSARDSNRPY EISEDSQMPY YNNSATVEEN DRFHVMQNNL DHHHSSPDDG SQKINSSNTQ  60
IFEAQYCTLE SSSANGVYPA QSSTSSHSIS PLSGSPLSQH DSHSDHTYSS PPSASCLTEV  120
ADLQIKLKEL ENAILGPELD ITSDSPESFL QANVQLRPDN WRQLLGIDAG DLKQVIIACG  180
KAVAENDVFA TELLISELGQ LVSVSGDPMQ RLGAYMLEGI VARLSSSGSM LYKSLKCKEP  240
TSSELMSYMH LLYEICPFFK FGYMSANGAI AEAIKGENFV HIIDFQIAQG SQWITLIQAL  300
AARPGGPPYI KITGIDDSNS AYARGGGLDI VGRRLHSVAQ SCGLPFEFNA VPAASHEVQL  360
AHLALRPGEI IAVNFAYQLH HVPDESVSME NHRDRIIRMI KSINPRVVTL VEQESNTNTA  420
PFFPRYMETL NYYTAMFESI DVALPRDDQR RMSAEQHCVA RDIVNLIACE GAERVERHEL  480
FGKWKARFAM AGFRPYPLSS VVNNTINTLL RSYNSCYRLE ERGGVLYLGW KNRVLVVSSA  540
WC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-60	174	541	6	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.21617	0.0	callus\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG355600.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ858766	0.0	HQ858766.1 Zea mays clone UT1682 GRAS transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793720.1	0.0	scarecrow-like protein 21
Refseq	XP_025793721.1	0.0	scarecrow-like protein 21
Refseq	XP_025793722.1	0.0	scarecrow-like protein 21
Refseq	XP_025793723.1	0.0	scarecrow-like protein 21
Swissprot	Q8GVE1	0.0	CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBL	A0A2T7C735	0.0	A0A2T7C735_9POAL; Uncharacterized protein
STRING	Pavir.Ia02739.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG355600.4.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Tanabe S, et al. The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23. Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51 [PMID:26287768]