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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG355600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 543aa MW: 60141.7 Da PI: 5.5481 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 431.1 | 8.5e-132 | 172 | 541 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++++++c +av+++d +++ l+++l +l+s +gdpmqRl ay++e++ arl++s+s lyk+l+++e + sse +++++l++e++P+ Pavir.9NG355600.1.p 172 LKQVIIACGKAVAENDVFATELLISELGQLVSVSGDPMQRLGAYMLEGIVARLSSSGSMLYKSLKCKEPT---SSELMSYMHLLYEICPF 258 57899****************************************************************9...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +kf+++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp ++iTg+++++s + l +g+rL+++A+++g+pfef Pavir.9NG355600.1.p 259 FKFGYMSANGAIAEAIKGENFVHIIDFQIAQGSQWITLIQALAARPGGPPYIKITGIDDSNSAyaRGGGLDIVGRRLHSVAQSCGLPFEF 348 ***********************************************************988899999********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n+ v + ++++l +L+++pgE +aVn+++qlh+++desvs+e++rd++++++ks++P+vv++veqe+++n+++F+ r +e+l+yy+a+f Pavir.9NG355600.1.p 349 NA-VPAASHEVQLAHLALRPGEIIAVNFAYQLHHVPDESVSMENHRDRIIRMIKSINPRVVTLVEQESNTNTAPFFPRYMETLNYYTAMF 437 **.7999*********************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +s+++ lpr+++ r++ E+++++r+ivn++acegaer+erhe ++kW++r+ +aGF+p+pls+ +++++++llr ++s yr+ee+ g l Pavir.9NG355600.1.p 438 ESIDVALPRDDQRRMSAEQHCVARDIVNLIACEGAERVERHELFGKWKARFAMAGFRPYPLSSVVNNTINTLLRSYNSC-YRLEERGGVL 526 *****************************************************************************55.********** PP GRAS 359 vlgWkdrpLvsvSaW 373 +lgWk+r Lv+ SaW Pavir.9NG355600.1.p 527 YLGWKNRVLVVSSAW 541 *************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.57 | 146 | 523 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-129 | 172 | 541 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MSARDSNRPY EISEDSQMPY YNNSATVEEN DRFHVMQNNL DHHHSSPDDG SQKINSSNTQ 60 IFEAQYCTLE SSSANGVYPA QSSTSSHSIS PLSGSPLSQH DSHSDHTYSS PPSASCLTEV 120 ADLQIKLKEL ENAILGPELD ITSDSPESFL QANVQLRPDN WRQLLGIDAG DLKQVIIACG 180 KAVAENDVFA TELLISELGQ LVSVSGDPMQ RLGAYMLEGI VARLSSSGSM LYKSLKCKEP 240 TSSELMSYMH LLYEICPFFK FGYMSANGAI AEAIKGENFV HIIDFQIAQG SQWITLIQAL 300 AARPGGPPYI KITGIDDSNS AYARGGGLDI VGRRLHSVAQ SCGLPFEFNA VPAASHEVQL 360 AHLALRPGEI IAVNFAYQLH HVPDESVSME NHRDRIIRMI KSINPRVVTL VEQESNTNTA 420 PFFPRYMETL NYYTAMFESI DVALPRDDQR RMSAEQHCVA RDIVNLIACE GAERVERHEL 480 FGKWKARFAM AGFRPYPLSS VVNNTINTLL RSYNSCYRLE ERGGVLYLGW KNRVLVVSSA 540 WC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-60 | 174 | 541 | 6 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.21617 | 0.0 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG355600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ858766 | 0.0 | HQ858766.1 Zea mays clone UT1682 GRAS transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793720.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_025793721.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_025793722.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_025793723.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A2T7C735 | 0.0 | A0A2T7C735_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02739.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG355600.1.p |
Publications ? help Back to Top | |||
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