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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG332100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 120aa MW: 12513.8 Da PI: 6.769 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.9e-20 | 11 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r ++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ + +g Pavir.9NG332100.1.p 11 TKYRGIRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAQRG 62 69********.**********8333..4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.20E-22 | 11 | 70 | No hit | No description |
Pfam | PF00847 | 7.6E-14 | 11 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-33 | 12 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.078 | 12 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 12 | 70 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-31 | 12 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-12 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-12 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MEDGSKDAGG TKYRGIRKRP WGKFAAEIRD PERGGARVWL GTFDTAEEAA RAYDRAAFAQ 60 RGAAAVLNFP GEAVAGGAMS RGGAGGSSSS PPPSGRARGD AEKIELECLD DRILDEVRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-28 | 1 | 76 | 1 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG332100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728277 | 8e-63 | KJ728277.1 Zea mays clone pUT6555 AP2-EREBP transcription factor (EREB74) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464556.2 | 7e-45 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 4e-31 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A3L6TMC0 | 8e-45 | A0A3L6TMC0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia01823.1.p | 5e-78 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG332100.1.p |
Publications ? help Back to Top | |||
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