 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.9NG314000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 365aa MW: 38917.2 Da PI: 6.706 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9NG314000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58 | 1.6e-18 | 137 | 189 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++ eq+++Le+ Fe +++ e++++LA+ lgL+ rqV +WFqNrRa++k
Pavir.9NG314000.1.p 137 KRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 189
44799***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 128.4 | 2.9e-41 | 135 | 227 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
e+krrls eqv++LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e
Pavir.9NG314000.1.p 135 ERKRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALLAHNKKLHAE 224
69**************************************************************************************99 PP
HD-ZIP_I/II 91 lke 93
+++
Pavir.9NG314000.1.p 225 IMA 227
975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MKPMATNGMA PSFFPANFLL QMQQPLPHHP QQQEHHHHHH HHDAGHHEHE APTHHLLAPP 60
PPGLVSPFLH DFGGAMAAPP MLAGGGLGKR MYADGAGDDG NLQHAAADPQ QQDGGAAASD 120
DEEGSAKAGG GCGGERKRRL SVEQVRTLER SFEVANKLEP ERKAQLARAL GLQPRQVAIW 180
FQNRRARWKT KQLEKDYDAL RRQLDAARAE NDALLAHNKK LHAEIMALKG GGGGGGRQEA 240
ASELINLNVK ETEASCSNRS ENSSEINLDI SRAPAPAAAD HESPAAMNGH RGLPFYASAA 300
VDQLLHSGHP SPAAAEPKME LGHGATADTP SATPGGSFGS LLCGAVVDEQ PPFWPWADGH 360
HNFQ*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 134 | 139 | ERKRRL |
| 2 | 183 | 191 | RRARWKTKQ |
| 3 | 228 | 236 | KGGGGGGGR |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
