PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG288300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 483aa    MW: 50267.1 Da    PI: 7.3424
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG288300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.8e-1555114256
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                          r+R+++ +eq+++Le  F++   +p ++e++++  +l     + +++V++WFqNr+ + k
  Pavir.9NG288300.1.p  55 RPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygPVGDANVFYWFQNRKSRTK 114
                          89*****************99****************99999****************99 PP
2Wus_type_Homeobox105.92.6e-3454116264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          +r+RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG ++d+NVfyWFQNrk+R ++k
  Pavir.9NG288300.1.p  54 PRPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGPVGDANVFYWFQNRKSRTKHK 116
                          689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.2E-1251120IPR009057Homeodomain-like
PROSITE profilePS500719.96151116IPR001356Homeobox domain
SMARTSM003892.4E-653120IPR001356Homeobox domain
CDDcd000864.65E-754116No hitNo description
Gene3DG3DSA:1.10.10.607.2E-654115IPR009057Homeodomain-like
PfamPF000463.6E-1355115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MASSNRHWPS MYRSSLACNF QQPQPDMNIG GGGGGGKSSL MSSRCEESGS NPEPRPRWNP  60
RPEQIRILEG IFNSGMVNPP RDEIRRIRLQ LQEYGPVGDA NVFYWFQNRK SRTKHKLRAA  120
GQLQPSARAA LARACAPPPP APVTPPRHLF ASPVAPTSSS SSSSDRSSGS SKSVRPTFAL  180
PSPTAPAAQQ GVLPATAMDL ISPTPAPALA ARQLYYHSQL MAPAMPPMPE LIAFPEPLLL  240
QWPQGGHYLP ATELGGVLGA HTHEPAPAIS PSVLLGLCNE ARGQDCVDIS SSKGLGHGLD  300
WNTTCGSDLS SNKTDAVSAV IRDDEKARLG LLHHGFGAAA AAATSAPLDA TPVQQAAAAD  360
ASTAMLLLPS PAPSNVVAAA ATTAVLTDQL QGLLDAGLIG VGGTPPAPTA TVVAVARDAL  420
TCAATATAQF SVPAMRLFVK LAFGEAAVLV RHTGEPVLVD ESGATVEPLQ QDTLYYVLMA  480
TH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG288300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902421e-141AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809387.10.0WUSCHEL-related homeobox 12-like
SwissprotA3B6V01e-145WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLA0A2S3H9L50.0A0A2S3H9L5_9POAL; Uncharacterized protein
STRINGSi025013m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.18e-35homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]