PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG282600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 26199 Da PI: 10.9245 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 84 | 134 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +grW+AeIrdp + r+r +lg+f taeeAa+a++ a ++l+g+ Pavir.9NG282600.1.p 84 HFRGVRRRP-WGRWAAEIRDPHN---RRRLWLGTFSTAEEAAAAYDTANLRLRGA 134 69*******.**********732...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.5E-33 | 84 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 84 | 141 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.092 | 84 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-30 | 84 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-13 | 84 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.16E-28 | 84 | 141 | No hit | No description |
PRINTS | PR00367 | 2.2E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MGPNPSLRQL AASAAEVALT ASEPPPQPRA RVVRILVHDA DATDSSSSED EAARPPLRRA 60 RGGSSSVGAK RRVMEAAGAN SPVHFRGVRR RPWGRWAAEI RDPHNRRRLW LGTFSTAEEA 120 AAAYDTANLR LRGASAPTNF PSARYALSLP PEPAKPIISL TPEPRKVITL PPVPVKPTVP 180 LQVKEGGNYD GQVEGGCSEL KAFAPKPIWE MIPVKRKKRS GCGNGSCLRI AIRAASVCVE 240 EVGGA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 84 | 141 | 5 | 63 | ATERF1 |
3gcc_A | 2e-19 | 84 | 141 | 5 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.7704 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG282600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794389.1 | 1e-118 | ethylene-responsive transcription factor CRF3-like | ||||
TrEMBL | A0A2S3IGU2 | 1e-116 | A0A2S3IGU2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00165.1.p | 1e-174 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-21 | erf domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG282600.1.p |