PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG282600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 246aa    MW: 26199 Da    PI: 10.9245
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG282600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-1984134256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +++GVr+++ +grW+AeIrdp +   r+r +lg+f taeeAa+a++ a ++l+g+
  Pavir.9NG282600.1.p  84 HFRGVRRRP-WGRWAAEIRDPHN---RRRLWLGTFSTAEEAAAAYDTANLRLRGA 134
                          69*******.**********732...4*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-3384147IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2284141IPR016177DNA-binding domain
PROSITE profilePS5103224.09284141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3084142IPR001471AP2/ERF domain
PfamPF008472.0E-1384133IPR001471AP2/ERF domain
CDDcd000185.16E-2884141No hitNo description
PRINTSPR003672.2E-108596IPR001471AP2/ERF domain
PRINTSPR003672.2E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGPNPSLRQL AASAAEVALT ASEPPPQPRA RVVRILVHDA DATDSSSSED EAARPPLRRA  60
RGGSSSVGAK RRVMEAAGAN SPVHFRGVRR RPWGRWAAEI RDPHNRRRLW LGTFSTAEEA  120
AAAYDTANLR LRGASAPTNF PSARYALSLP PEPAKPIISL TPEPRKVITL PPVPVKPTVP  180
LQVKEGGNYD GQVEGGCSEL KAFAPKPIWE MIPVKRKKRS GCGNGSCLRI AIRAASVCVE  240
EVGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1984141563ATERF1
3gcc_A2e-1984141563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.77040.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG282600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794389.11e-118ethylene-responsive transcription factor CRF3-like
TrEMBLA0A2S3IGU21e-116A0A2S3IGU2_9POAL; Uncharacterized protein
STRINGPavir.Ia00165.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-21erf domain protein 9